IL_8Q4F_211

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_211 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3477

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8Q4F|1|a|G|875
8Q4F|1|a|C|876
8Q4F|1|a|A|877
8Q4F|1|a|A|878
8Q4F|1|a|G|879
8Q4F|1|a|G|880
*
8Q4F|1|a|C|897
8Q4F|1|a|C|898
8Q4F|1|a|A|899
8Q4F|1|a|A|900
8Q4F|1|a|C|901
8Q4F|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16