3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_215 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.0976
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

8Q4F|1|a|G|1666
8Q4F|1|a|G|1667
8Q4F|1|a|A|1668
8Q4F|1|a|A|1669
8Q4F|1|a|C|1670
8Q4F|1|a|U|1671
8Q4F|1|a|A|1672
8Q4F|1|a|G|1673
8Q4F|1|a|G|1674
*
8Q4F|1|a|C|1990
8Q4F|1|a|U|1991
8Q4F|1|a|G|1992
8Q4F|1|a|U|1993
8Q4F|1|a|C|1994

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain j
Large ribosomal subunit protein uL14

Coloring options:


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