IL_8Q4F_216

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGC*GAUG

Length

7 nucleotides

Bulged bases

8Q4F|1|a|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_216 not in the Motif Atlas

Geometric match to IL_3SZX_001

Geometric discrepancy: 0.2825

The information below is about IL_3SZX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8Q4F|1|a|U|1769
8Q4F|1|a|G|1770
8Q4F|1|a|C|1771
*
8Q4F|1|a|G|1980
8Q4F|1|a|A|1981
8Q4F|1|a|U|1982
8Q4F|1|a|G|1983

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA