IL_8Q4F_220

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCA*UACGCGAG

Length

12 nucleotides

Bulged bases

8Q4F|1|a|A|2572, 8Q4F|1|a|C|2573, 8Q4F|1|a|G|2576, 8Q4F|1|a|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|a|C|2510
8Q4F|1|a|U|2511
8Q4F|1|a|C|2512
8Q4F|1|a|A|2513
*
8Q4F|1|a|U|2571
8Q4F|1|a|A|2572
8Q4F|1|a|C|2573
8Q4F|1|a|G|2574
8Q4F|1|a|C|2575
8Q4F|1|a|G|2576
8Q4F|1|a|A|2577
8Q4F|1|a|G|2578

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13

Chain z

Large ribosomal subunit protein bL32