3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGAAU*GGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_226 not in the Motif Atlas
Homologous match to IL_4LFB_065
Geometric discrepancy: 0.1272
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

8Q4F|1|A|A|673
8Q4F|1|A|G|674
8Q4F|1|A|A|675
8Q4F|1|A|A|676
8Q4F|1|A|U|677
*
8Q4F|1|A|G|713
8Q4F|1|A|G|714
8Q4F|1|A|A|715
8Q4F|1|A|A|716
8Q4F|1|A|U|717

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
Small ribosomal subunit protein bS6, fully modified isoform
Chain K
Small ribosomal subunit protein uS11
Chain R
Small ribosomal subunit protein bS18
Chain U
Small ribosomal subunit protein bS21
Chain c
Large ribosomal subunit protein uL2

Coloring options:


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