IL_8Q4F_227

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_227 not in the Motif Atlas

Homologous match to IL_5J7L_064

Geometric discrepancy: 0.2737

The information below is about IL_5J7L_064

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8Q4F|1|A|U|1440
8Q4F|1|A|A|1441
8Q4F|1|A|G|1442
*
8Q4F|1|A|C|1460
8Q4F|1|A|G|1461

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20

Chain o

Large ribosomal subunit protein bL19