IL_8Q5I_012

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUUG*CG

Length

6 nucleotides

Bulged bases

8Q5I|1|1|U|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_012 not in the Motif Atlas

Geometric match to IL_5J7L_324

Geometric discrepancy: 0.1968

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8Q5I|1|1|C|439
8Q5I|1|1|U|440
8Q5I|1|1|U|441
8Q5I|1|1|G|442
*
8Q5I|1|1|C|487
8Q5I|1|1|G|488

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L32