IL_8Q5I_013

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGU,ACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_013 not in the Motif Atlas

Geometric match to IL_3R1C_011

Geometric discrepancy: 0.1414

The information below is about IL_3R1C_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8Q5I|1|1|G|442
8Q5I|1|1|G|443
8Q5I|1|1|U|444
*
8Q5I|1|1|A|485
8Q5I|1|1|C|486
8Q5I|1|1|C|487

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L32

Chain n

60S ribosomal protein L6