IL_8Q5I_016
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GGAUAAUGGC*GACGAUAC
- Length
- 18 nucleotides
- Bulged bases
- 8Q5I|1|1|A|515, 8Q5I|1|1|U|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_016 not in the Motif Atlas
- Homologous match to IL_8C3A_021
- Geometric discrepancy: 0.0618
- The information below is about IL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18200.1
- Basepair signature
- cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Q5I|1|1|G|513
8Q5I|1|1|G|514
8Q5I|1|1|A|515
8Q5I|1|1|U|516
8Q5I|1|1|A|517
8Q5I|1|1|A|518
8Q5I|1|1|U|519
8Q5I|1|1|G|520
8Q5I|1|1|G|521
8Q5I|1|1|C|522
*
8Q5I|1|1|G|564
8Q5I|1|1|A|565
8Q5I|1|1|C|566
8Q5I|1|1|G|567
8Q5I|1|1|A|568
8Q5I|1|1|U|569
8Q5I|1|1|A|570
8Q5I|1|1|C|571
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain l
- 60S ribosomal protein L4-B
- Chain o
- 60S ribosomal protein L7-A
- Chain u
- 60S ribosomal protein L14-B
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