IL_8Q5I_023

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_023 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.0526

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8Q5I|1|1|C|754
8Q5I|1|1|U|755
8Q5I|1|1|G|756
8Q5I|1|1|A|757
8Q5I|1|1|U|758
8Q5I|1|1|G|759
*
8Q5I|1|1|C|764
8Q5I|1|1|G|765
8Q5I|1|1|G|766
8Q5I|1|1|A|767
8Q5I|1|1|U|768
8Q5I|1|1|G|769

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-B

Chain t

60S ribosomal protein L13