IL_8Q5I_026

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8Q5I|1|1|A|892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_026 not in the Motif Atlas

Geometric match to IL_4WF9_022

Geometric discrepancy: 0.1256

The information below is about IL_4WF9_022

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8Q5I|1|1|A|824
8Q5I|1|1|U|825
*
8Q5I|1|1|A|891
8Q5I|1|1|A|892
8Q5I|1|1|U|893

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain AQ

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-B