IL_8Q5I_029

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_029 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0472

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8Q5I|1|1|G|865
8Q5I|1|1|G|866
8Q5I|1|1|U|867
8Q5I|1|1|U|868
*
8Q5I|1|1|A|884
8Q5I|1|1|U|885
8Q5I|1|1|C|886

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L37-B

Chain k

60S ribosomal protein L3