IL_8Q5I_041

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UCUUG*UAA

Length

8 nucleotides

Bulged bases

8Q5I|1|1|U|1012, 8Q5I|1|1|U|1013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_041 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2545

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

8Q5I|1|1|U|1010
8Q5I|1|1|C|1011
8Q5I|1|1|U|1012
8Q5I|1|1|U|1013
8Q5I|1|1|G|1014
*
8Q5I|1|1|U|1030
8Q5I|1|1|A|1031
8Q5I|1|1|A|1032

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

60S ribosomal protein L5

Chain r

60S ribosomal protein L10

Chain s

60S ribosomal protein L11-B