IL_8Q5I_043

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGC*GA

Length

5 nucleotides

Bulged bases

8Q5I|1|1|G|1071

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_043 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.0829

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8Q5I|1|1|U|1070
8Q5I|1|1|G|1071
8Q5I|1|1|C|1072
*
8Q5I|1|1|G|1079
8Q5I|1|1|A|1080

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AC

60S ribosomal protein L29

Chain m

60S ribosomal protein L5