IL_8Q5I_076
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8Q5I|1|1|U|1927
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_076 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0705
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8Q5I|1|1|C|1914
8Q5I|1|1|G|1915
8Q5I|1|1|U|1916
8Q5I|1|1|A|1917
8Q5I|1|1|A|1918
8Q5I|1|1|C|1919
*
8Q5I|1|1|G|1924
8Q5I|1|1|G|1925
8Q5I|1|1|A|1926
8Q5I|1|1|U|1927
8Q5I|1|1|A|1928
8Q5I|1|1|A|1929
8Q5I|1|1|G|1930
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 60S ribosomal protein L41
- Chain AQ
- 60S ribosomal protein L43-A
Coloring options: