IL_8Q5I_084
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- 8Q5I|1|1|A|2185
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_084 not in the Motif Atlas
- Homologous match to IL_8C3A_092
- Geometric discrepancy: 0.1397
- The information below is about IL_8C3A_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58579.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8Q5I|1|1|G|2184
8Q5I|1|1|A|2185
8Q5I|1|1|A|2186
8Q5I|1|1|U|2187
8Q5I|1|1|G|2188
*
8Q5I|1|1|C|2213
8Q5I|1|1|G|2214
8Q5I|1|1|C|2215
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 10
- Mixture of endogenous E-tRNAs
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- DNA (5'-R(P*GP*GP*CP*AP*G)-3')
- Chain j
- 60S ribosomal protein L2-B
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