IL_8Q5I_089

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8Q5I|1|1|A|2375, 8Q5I|1|1|C|2955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_089 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.0589

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8Q5I|1|1|G|2374
8Q5I|1|1|A|2375
8Q5I|1|1|A|2376
*
8Q5I|1|1|U|2953
8Q5I|1|1|A|2954
8Q5I|1|1|C|2955
8Q5I|1|1|C|2956

Current chains

Chain 1

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain x

Ribosomal protein L22