IL_8Q5I_106

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8Q5I|1|1|A|2913, 8Q5I|1|1|C|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_106 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.0897

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8Q5I|1|1|C|2853
8Q5I|1|1|U|2854
*
8Q5I|1|1|A|2912
8Q5I|1|1|A|2913
8Q5I|1|1|C|2914
8Q5I|1|1|G|2915

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3

Chain w

Ribosomal protein L13