IL_8Q5I_108

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8Q5I|1|1|A|2883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_108 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.0981

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8Q5I|1|1|U|2863
8Q5I|1|1|A|2864
*
8Q5I|1|1|U|2881
8Q5I|1|1|A|2882
8Q5I|1|1|A|2883
8Q5I|1|1|G|2884

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L40-B

Chain q

60S ribosomal protein L9-B

Chain w

Ribosomal protein L13