IL_8Q5I_175

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8Q5I|1|A|A|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_175 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.079

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8Q5I|1|A|G|614
8Q5I|1|A|U|615
8Q5I|1|A|U|616
8Q5I|1|A|A|617
8Q5I|1|A|A|618
8Q5I|1|A|A|619
8Q5I|1|A|A|620
*
8Q5I|1|A|U|1089
8Q5I|1|A|C|1090

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein S23 (S12)

Chain b

40S ribosomal protein S26