IL_8Q5I_181

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUUA*UC

Length

6 nucleotides

Bulged bases

8Q5I|1|A|U|804, 8Q5I|1|A|U|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_181 not in the Motif Atlas

Homologous match to IL_8C3A_434

Geometric discrepancy: 0.1063

The information below is about IL_8C3A_434

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8Q5I|1|A|G|803
8Q5I|1|A|U|804
8Q5I|1|A|U|805
8Q5I|1|A|A|806
*
8Q5I|1|A|U|836
8Q5I|1|A|C|837

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain z

60S ribosomal protein L19-A