IL_8Q5I_237
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UGCAUGGC*GUCUGUGAUG
- Length
- 18 nucleotides
- Bulged bases
- 8Q5I|1|A|C|1259, 8Q5I|1|A|U|1418, 8Q5I|1|A|G|1421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_237 not in the Motif Atlas
- Homologous match to IL_8C3A_505
- Geometric discrepancy: 0.0634
- The information below is about IL_8C3A_505
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06463.1
- Basepair signature
- cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Q5I|1|A|U|1257
8Q5I|1|A|G|1258
8Q5I|1|A|C|1259
8Q5I|1|A|A|1260
8Q5I|1|A|U|1261
8Q5I|1|A|G|1262
8Q5I|1|A|G|1263
8Q5I|1|A|C|1264
*
8Q5I|1|A|G|1415
8Q5I|1|A|U|1416
8Q5I|1|A|C|1417
8Q5I|1|A|U|1418
8Q5I|1|A|G|1419
8Q5I|1|A|U|1420
8Q5I|1|A|G|1421
8Q5I|1|A|A|1422
8Q5I|1|A|U|1423
8Q5I|1|A|G|1424
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein S3
- Chain L
- 40S ribosomal protein S10-A
- Chain V
- Ribosomal protein S10
- Chain e
- 40S ribosomal protein S29A
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