IL_8QBT_005

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

8QBT|1|A|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QBT_005 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.0551

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

8QBT|1|A|G|81
8QBT|1|A|U|82
8QBT|1|A|A|83
8QBT|1|A|A|84
8QBT|1|A|G|85
*
8QBT|1|A|C|97
8QBT|1|A|G|98
8QBT|1|A|U|99
8QBT|1|A|U|100
8QBT|1|A|A|101
8QBT|1|A|U|102
8QBT|1|A|A|103
8QBT|1|A|A|104
8QBT|1|A|C|105

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24

Chain Y

Large ribosomal subunit protein uL29