IL_8QBT_007
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_007 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.0465
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8QBT|1|A|G|188
8QBT|1|A|G|189
8QBT|1|A|A|190
8QBT|1|A|A|191
8QBT|1|A|C|192
8QBT|1|A|U|193
8QBT|1|A|G|194
*
8QBT|1|A|C|201
8QBT|1|A|U|202
8QBT|1|A|A|203
8QBT|1|A|A|204
8QBT|1|A|G|205
8QBT|1|A|U|206
8QBT|1|A|A|207
8QBT|1|A|C|208
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain X
- Large ribosomal subunit protein bL28
- Chain c
- Large ribosomal subunit protein bL34
- Chain d
- Large ribosomal subunit protein bL35
Coloring options: