IL_8QBT_010

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QBT_010 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2523

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8QBT|1|A|C|274
8QBT|1|A|C|275
8QBT|1|A|U|276
8QBT|1|A|G|277
8QBT|1|A|A|278
8QBT|1|A|A|279
8QBT|1|A|U|280
8QBT|1|A|C|281
*
8QBT|1|A|G|359
8QBT|1|A|U|360
8QBT|1|A|G|361
8QBT|1|A|A|362
8QBT|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains