IL_8QBT_012
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8QBT|1|A|A|504, 8QBT|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_012 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.0563
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
8QBT|1|A|G|481
8QBT|1|A|A|482
8QBT|1|A|A|483
8QBT|1|A|C|484
*
8QBT|1|A|G|496
8QBT|1|A|A|497
8QBT|1|A|G|498
8QBT|1|A|U|499
8QBT|1|A|G|500
8QBT|1|A|A|501
8QBT|1|A|A|502
8QBT|1|A|A|503
8QBT|1|A|A|504
8QBT|1|A|A|505
8QBT|1|A|G|506
8QBT|1|A|A|507
8QBT|1|A|A|508
8QBT|1|A|C|509
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain S
- Large ribosomal subunit protein uL22
- Chain U
- Large ribosomal subunit protein uL24
Coloring options: