3D structure

PDB id
8QBT (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli ApdP-stalled ribosomal complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8QBT|1|A|A|1127, 8QBT|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QBT_038 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0577
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8QBT|1|A|G|1024
8QBT|1|A|G|1025
8QBT|1|A|G|1026
8QBT|1|A|A|1027
8QBT|1|A|A|1028
8QBT|1|A|A|1029
8QBT|1|A|C|1030
*
8QBT|1|A|G|1124
8QBT|1|A|G|1125
8QBT|1|A|A|1126
8QBT|1|A|A|1127
8QBT|1|A|G|1128
8QBT|1|A|A|1129
8QBT|1|A|U|1130
8QBT|1|A|G|1131
8QBT|1|A|U|1132
8QBT|1|A|A|1133
8QBT|1|A|A|1134
8QBT|1|A|C|1135
8QBT|1|A|G|1136
8QBT|1|A|G|1137
8QBT|1|A|G|1138
8QBT|1|A|G|1139
8QBT|1|A|C|1140

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain J
Large ribosomal subunit protein uL13
Chain M
50S ribosomal protein L16
Chain e
Large ribosomal subunit protein bL36A

Coloring options:


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