IL_8QBT_090

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QBT_090 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.1395

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8QBT|1|A|A|2453
8QBT|1|A|G|2454
*
8QBT|1|A|C|2498
8QBT|1|A|C|2499
8QBT|1|A|U|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain D

50S ribosomal protein L3

Chain W

Large ribosomal subunit protein bL27

Chain f

ApdP nascent chain