IL_8QBT_143

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8QBT|1|i|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QBT_143 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0744

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8QBT|1|i|C|569
8QBT|1|i|G|570
8QBT|1|i|U|571
8QBT|1|i|A|572
8QBT|1|i|A|573
8QBT|1|i|A|574
8QBT|1|i|G|575
*
8QBT|1|i|C|880
8QBT|1|i|G|881

Current chains

Chain i

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein uS8

Chain t

30S ribosomal protein S12

Chain y

Small ribosomal subunit protein uS17