IL_8QBT_146
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GU*AUAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_146 not in the Motif Atlas
- Homologous match to IL_5J7L_029
- Geometric discrepancy: 0.0676
- The information below is about IL_5J7L_029
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.4
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8QBT|1|i|G|597
8QBT|1|i|U|598
*
8QBT|1|i|A|640
8QBT|1|i|U|641
8QBT|1|i|A|642
8QBT|1|i|C|643
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain p
- Small ribosomal subunit protein uS8
- Chain y
- Small ribosomal subunit protein uS17
Coloring options: