IL_8QBT_154
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_154 not in the Motif Atlas
- Homologous match to IL_5J7L_037
- Geometric discrepancy: 0.0552
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8QBT|1|i|C|779
8QBT|1|i|A|780
8QBT|1|i|A|781
8QBT|1|i|A|782
8QBT|1|i|C|783
*
8QBT|1|i|G|799
8QBT|1|i|G|800
8QBT|1|i|U|801
8QBT|1|i|A|802
8QBT|1|i|G|803
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain 3
- Small ribosomal subunit protein bS21
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- 30S ribosomal protein S11
Coloring options: