IL_8QBT_163

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8QBT|1|i|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QBT_163 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.0702

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8QBT|1|i|U|1052
8QBT|1|i|G|1053
8QBT|1|i|C|1054
8QBT|1|i|A|1055
8QBT|1|i|U|1056
*
8QBT|1|i|A|1204
8QBT|1|i|U|1205
8QBT|1|i|G|1206

Current chains

Chain i

16S rRNA

Nearby chains

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA

Chain v

Small ribosomal subunit protein uS14