IL_8QFD_002
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUC*GU
- Length
- 5 nucleotides
- Bulged bases
- 8QFD|1|5|U|8
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_002 not in the Motif Atlas
- Homologous match to IL_8C3A_003
- Geometric discrepancy: 0.1416
- The information below is about IL_8C3A_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8QFD|1|5|A|7
8QFD|1|5|U|8
8QFD|1|5|C|9
*
8QFD|1|8|G|143
8QFD|1|8|U|144
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L7a
- Chain N
- 60S ribosomal protein L15
- Chain X
- 60S ribosomal protein L23a
Coloring options: