IL_8QFD_008
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AU*ACAUGU
- Length
- 8 nucleotides
- Bulged bases
- 8QFD|1|5|U|145
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_008 not in the Motif Atlas
- Homologous match to IL_8C3A_007
- Geometric discrepancy: 0.1687
- The information below is about IL_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8QFD|1|5|A|116
8QFD|1|5|U|117
*
8QFD|1|5|A|142
8QFD|1|5|C|143
8QFD|1|5|A|144
8QFD|1|5|U|145
8QFD|1|5|G|146
8QFD|1|5|U|147
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L7a
- Chain N
- 60S ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
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