IL_8QFD_009
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 8QFD|1|5|C|138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_009 not in the Motif Atlas
- Geometric match to IL_1S03_006
- Geometric discrepancy: 0.238
- The information below is about IL_1S03_006
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 60
Unit IDs
8QFD|1|5|C|120
8QFD|1|5|C|121
*
8QFD|1|5|G|137
8QFD|1|5|C|138
8QFD|1|5|G|139
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L7a
- Chain N
- 60S ribosomal protein L15
- Chain X
- 60S ribosomal protein L23a
- Chain h
- 60S ribosomal protein L35
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