IL_8QFD_014
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 8QFD|1|5|G|404, 8QFD|1|5|G|408
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_014 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.129
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8QFD|1|5|G|382
8QFD|1|5|A|383
8QFD|1|5|A|384
8QFD|1|5|C|385
*
8QFD|1|5|G|396
8QFD|1|5|A|397
8QFD|1|5|G|398
8QFD|1|5|U|399
8QFD|1|5|U|400
8QFD|1|5|C|401
8QFD|1|5|A|402
8QFD|1|5|A|403
8QFD|1|5|G|404
8QFD|1|5|A|405
8QFD|1|5|G|406
8QFD|1|5|G|407
8QFD|1|5|G|408
8QFD|1|5|C|409
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L17
- Chain Y
- 60S ribosomal protein L26
- Chain l
- 60S ribosomal protein L39
Coloring options: