IL_8QFD_020
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGGG*CG
- Length
- 7 nucleotides
- Bulged bases
- 8QFD|1|5|G|724, 8QFD|1|5|G|725
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_020 not in the Motif Atlas
- Homologous match to IL_8GLP_036
- Geometric discrepancy: 0.0518
- The information below is about IL_8GLP_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75501.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8QFD|1|5|C|722
8QFD|1|5|U|723
8QFD|1|5|G|724
8QFD|1|5|G|725
8QFD|1|5|G|726
*
8QFD|1|5|C|930
8QFD|1|5|G|931
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL30
- Chain M
- 60S ribosomal protein L14
- Chain S
- 60S ribosomal protein L18a
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