IL_8QFD_021

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8QFD|1|5|A|924, 8QFD|1|5|C|926, 8QFD|1|5|C|928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|A|727
8QFD|1|5|A|728
8QFD|1|5|G|729
8QFD|1|5|G|730
*
8QFD|1|5|C|920
8QFD|1|5|A|921
8QFD|1|5|G|922
8QFD|1|5|C|923
8QFD|1|5|A|924
8QFD|1|5|G|925
8QFD|1|5|C|926
8QFD|1|5|A|927
8QFD|1|5|C|928
8QFD|1|5|U|929

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a