IL_8QFD_026

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8QFD|1|5|C|1206, 8QFD|1|5|C|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_026 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.287

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8QFD|1|5|C|1074
8QFD|1|5|U|1075
8QFD|1|5|C|1076
*
8QFD|1|5|G|1205
8QFD|1|5|C|1206
8QFD|1|5|C|1207
8QFD|1|5|C|1208
8QFD|1|5|G|1209

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL30