IL_8QFD_035

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_035 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1351

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8QFD|1|5|C|1423
8QFD|1|5|G|1424
8QFD|1|5|A|1425
8QFD|1|5|G|1426
*
8QFD|1|5|C|1442
8QFD|1|5|G|1443
8QFD|1|5|A|1444
8QFD|1|5|G|1445

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

60S ribosomal protein L18