IL_8QFD_049
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_049 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1747
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QFD|1|5|C|1724
8QFD|1|5|G|1725
8QFD|1|5|G|1726
8QFD|1|5|U|1727
8QFD|1|5|A|1728
8QFD|1|5|A|1729
*
8QFD|1|5|U|1784
8QFD|1|5|A|1785
8QFD|1|5|A|1786
8QFD|1|5|A|1787
8QFD|1|5|U|1788
8QFD|1|5|G|1789
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L5
- Chain F
- Large ribosomal subunit protein uL30
- Chain I
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
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