IL_8QFD_062
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GACCCCAAAAA*UGAAAAUGGAUGGCGC
- Length
- 27 nucleotides
- Bulged bases
- 8QFD|1|5|C|1927, 8QFD|1|5|A|2033
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QFD|1|5|G|1925
8QFD|1|5|A|1926
8QFD|1|5|C|1927
8QFD|1|5|C|1928
8QFD|1|5|C|1929
8QFD|1|5|C|1930
8QFD|1|5|A|1931
8QFD|1|5|A|1933
8QFD|1|5|A|1934
8QFD|1|5|A|1935
8QFD|1|5|A|1936
*
8QFD|1|5|U|2030
8QFD|1|5|G|2031
8QFD|1|5|A|2032
8QFD|1|5|A|2033
8QFD|1|5|A|2034
8QFD|1|5|A|2035
8QFD|1|5|U|2036
8QFD|1|5|G|2037
8QFD|1|5|G|2038
8QFD|1|5|A|2039
8QFD|1|5|U|2040
8QFD|1|5|G|2041
8QFD|1|5|G|2042
8QFD|1|5|C|2043
8QFD|1|5|G|2044
8QFD|1|5|C|2045
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L10
- Chain O
- 60S ribosomal protein L13a
- Chain f
- 60S ribosomal protein L35a
- Chain m
- Ubiquitin-60S ribosomal protein L40
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