IL_8QFD_067
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8QFD|1|5|U|2297
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_067 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1237
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8QFD|1|5|C|2294
8QFD|1|5|C|2295
8QFD|1|5|U|2296
8QFD|1|5|U|2297
8QFD|1|5|G|2298
8QFD|1|5|A|2299
8QFD|1|5|A|2300
8QFD|1|5|G|2301
*
8QFD|1|5|U|2321
8QFD|1|5|G|2322
8QFD|1|5|G|2323
8QFD|1|5|A|2324
8QFD|1|5|G|2325
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
- Chain Y
- 60S ribosomal protein L26
- Chain e
- 60S ribosomal protein L32
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