IL_8QFD_070
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_070 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.1136
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 33
Unit IDs
8QFD|1|5|G|2398
8QFD|1|5|G|2399
8QFD|1|5|U|2400
8QFD|1|5|U|2401
*
8QFD|1|5|A|2775
8QFD|1|5|C|2776
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain X
- 60S ribosomal protein L23a
- Chain g
- 60S ribosomal protein L34
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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