IL_8QFD_071

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8QFD|1|5|A|2420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_071 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.1757

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8QFD|1|5|U|2407
8QFD|1|5|G|2408
8QFD|1|5|A|2409
8QFD|1|5|A|2410
8QFD|1|5|C|2411
*
8QFD|1|5|G|2419
8QFD|1|5|A|2420
8QFD|1|5|A|2421

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain l

60S ribosomal protein L39