IL_8QFD_078

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

8QFD|1|5|U|2679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_078 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.0767

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

8QFD|1|5|C|2638
8QFD|1|5|A|2639
8QFD|1|5|G|2640
*
8QFD|1|5|C|2677
8QFD|1|5|G|2678
8QFD|1|5|U|2679
8QFD|1|5|G|2680

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

60S ribosomal protein L34