IL_8QFD_084

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_084 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.0495

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8QFD|1|5|G|2839
8QFD|1|5|G|2840
8QFD|1|5|A|2841
8QFD|1|5|A|2842
*
8QFD|1|5|U|3840
8QFD|1|5|C|3841

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23