IL_8QFD_088

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_088 not in the Motif Atlas

Geometric match to IL_5TBW_080

Geometric discrepancy: 0.3308

The information below is about IL_5TBW_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8QFD|1|5|G|2888
8QFD|1|5|G|2889
*
8QFD|1|5|C|3602
8QFD|1|5|G|3603
8QFD|1|5|A|3604
8QFD|1|5|C|3605

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19