IL_8QFD_093

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8QFD|1|5|U|3709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_093 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.3032

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8QFD|1|5|C|3708
8QFD|1|5|U|3709
8QFD|1|5|G|3710
*
8QFD|1|5|C|3741
8QFD|1|5|G|3742

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8