IL_8QFD_102

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8QFD|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_102 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0879

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8QFD|1|5|U|3927
8QFD|1|5|A|3928
8QFD|1|5|G|3929
*
8QFD|1|5|U|4181
8QFD|1|5|G|4182
8QFD|1|5|G|4183
8QFD|1|5|G|4184

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain N

60S ribosomal protein L15

Chain o

60S ribosomal protein L36a